Variant report

Variant	rs59192349
Chromosome Location	chr4:19326304-19326305
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10006103	0.87[ASN][1000 genomes]
rs10006299	0.87[ASN][1000 genomes]
rs10009772	0.88[ASN][1000 genomes]
rs10012861	0.87[ASN][1000 genomes]
rs10015294	0.92[ASN][1000 genomes]
rs10025775	0.87[ASN][1000 genomes]
rs10028337	0.88[ASN][1000 genomes]
rs10031579	0.81[ASN][1000 genomes]
rs10032188	0.88[ASN][1000 genomes]
rs10032629	0.92[ASN][1000 genomes]
rs10034324	0.87[ASN][1000 genomes]
rs10212992	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10222776	0.87[ASN][1000 genomes]
rs10222803	0.87[ASN][1000 genomes]
rs10222907	0.87[ASN][1000 genomes]
rs10222971	0.86[ASN][1000 genomes]
rs10223045	0.87[ASN][1000 genomes]
rs10470799	0.81[ASN][1000 genomes]
rs11941599	0.87[ASN][1000 genomes]
rs11941815	0.86[ASN][1000 genomes]
rs11943058	0.97[ASN][1000 genomes]
rs11945412	0.87[ASN][1000 genomes]
rs11946126	0.86[ASN][1000 genomes]
rs13434929	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1388145	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388148	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16898193	0.91[ASN][1000 genomes]
rs28392619	0.87[ASN][1000 genomes]
rs28406392	0.87[ASN][1000 genomes]
rs28445313	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28468581	0.92[ASN][1000 genomes]
rs28505527	0.86[ASN][1000 genomes]
rs28506946	0.86[ASN][1000 genomes]
rs28584356	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs28612466	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs28625215	0.87[ASN][1000 genomes]
rs28649908	0.87[ASN][1000 genomes]
rs28654609	0.87[ASN][1000 genomes]
rs28675174	0.92[ASN][1000 genomes]
rs28698715	0.87[ASN][1000 genomes]
rs28713269	0.87[ASN][1000 genomes]
rs28749929	0.87[ASN][1000 genomes]
rs28809022	0.92[ASN][1000 genomes]
rs28834385	0.87[ASN][1000 genomes]
rs28849735	0.92[ASN][1000 genomes]
rs28861473	0.87[ASN][1000 genomes]
rs59810064	0.87[ASN][1000 genomes]
rs60069867	0.87[ASN][1000 genomes]
rs62296707	0.87[ASN][1000 genomes]
rs62296709	0.87[ASN][1000 genomes]
rs62298737	0.92[ASN][1000 genomes]
rs73092965	0.92[ASN][1000 genomes]
rs73092970	0.92[ASN][1000 genomes]
rs73092977	0.92[ASN][1000 genomes]
rs73092981	0.92[ASN][1000 genomes]
rs73092983	0.92[ASN][1000 genomes]
rs73092984	0.92[ASN][1000 genomes]
rs73108776	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108783	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108784	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73108791	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73110735	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs73110746	0.94[ASN][1000 genomes]
rs73800842	0.83[ASN][1000 genomes]
rs982066	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs982067	0.80[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9990468	0.87[ASN][1000 genomes]
rs9994751	0.80[ASN][1000 genomes]
rs9998589	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762412	chr4:19317057-19339300	Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19325200-19327000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:19325600-19326400	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links