Variant report

Variant	rs73800842
Chromosome Location	chr4:19301571-19301572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10027425	0.97[EUR][1000 genomes]
rs10212992	0.82[ASN][1000 genomes]
rs10222776	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11943058	0.80[ASN][1000 genomes]
rs1388145	0.83[ASN][1000 genomes]
rs1478046	0.88[ASN][1000 genomes]
rs16898193	0.88[ASN][1000 genomes]
rs34666903	0.88[ASN][1000 genomes]
rs57517108	0.80[ASN][1000 genomes]
rs57920411	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58006599	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59192349	0.83[ASN][1000 genomes]
rs60408185	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61399606	0.88[ASN][1000 genomes]
rs62296407	0.87[EUR][1000 genomes]
rs62296409	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296410	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296411	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296413	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296415	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296419	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296446	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296448	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296450	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296451	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296453	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296454	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296662	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296663	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296664	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296703	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296704	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296705	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296706	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296708	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296710	0.92[EUR][1000 genomes]
rs62298660	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298661	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298662	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298686	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298687	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298730	0.95[EUR][1000 genomes]
rs62298731	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298732	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298734	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298735	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298738	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62300184	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62300186	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73104846	0.80[ASN][1000 genomes]
rs73104871	0.88[ASN][1000 genomes]
rs73106871	0.88[ASN][1000 genomes]
rs73106879	0.88[ASN][1000 genomes]
rs73800847	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73800857	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73800865	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73800869	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461282	chr4:19035608-19304946	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593782	chr4:19035608-19304946	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv878726	chr4:19038807-19304946	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv829869	chr4:19128282-19310464	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19297600-19302800	Weak transcription	NHLF	lung
2	chr4:19300600-19301800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:19300600-19301800	Enhancers	Fetal Stomach	stomach
4	chr4:19300600-19302200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:19300600-19303000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:19300600-19303400	Enhancers	NHDF-Ad	bronchial

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