Variant report

Variant	rs62296710
Chromosome Location	chr4:19481437-19481438
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10000100	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10027425	0.90[EUR][1000 genomes]
rs10222776	0.92[EUR][1000 genomes]
rs10440273	0.95[EUR][1000 genomes]
rs28427059	0.95[EUR][1000 genomes]
rs28582056	0.95[EUR][1000 genomes]
rs28595109	0.95[EUR][1000 genomes]
rs28630700	0.95[EUR][1000 genomes]
rs28665147	0.95[EUR][1000 genomes]
rs28715168	0.95[EUR][1000 genomes]
rs57920411	0.87[EUR][1000 genomes]
rs58006599	0.87[EUR][1000 genomes]
rs60408185	0.87[EUR][1000 genomes]
rs62296407	0.84[EUR][1000 genomes]
rs62296409	0.92[EUR][1000 genomes]
rs62296410	0.92[EUR][1000 genomes]
rs62296411	0.92[EUR][1000 genomes]
rs62296413	0.87[EUR][1000 genomes]
rs62296415	0.87[EUR][1000 genomes]
rs62296419	0.87[EUR][1000 genomes]
rs62296446	0.87[EUR][1000 genomes]
rs62296448	0.87[EUR][1000 genomes]
rs62296450	0.87[EUR][1000 genomes]
rs62296451	0.87[EUR][1000 genomes]
rs62296453	0.87[EUR][1000 genomes]
rs62296454	0.87[EUR][1000 genomes]
rs62296662	0.90[EUR][1000 genomes]
rs62296663	0.90[EUR][1000 genomes]
rs62296664	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62296703	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62296704	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62296705	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62296706	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62296708	0.95[EUR][1000 genomes]
rs62296737	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296738	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298660	0.87[EUR][1000 genomes]
rs62298661	0.87[EUR][1000 genomes]
rs62298662	0.87[EUR][1000 genomes]
rs62298686	0.87[EUR][1000 genomes]
rs62298687	0.87[EUR][1000 genomes]
rs62298730	0.87[EUR][1000 genomes]
rs62298731	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62298732	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62298734	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62298735	0.87[EUR][1000 genomes]
rs62298738	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62298767	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298770	0.90[EUR][1000 genomes]
rs62298816	0.95[EUR][1000 genomes]
rs62298824	0.95[EUR][1000 genomes]
rs62298825	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62299860	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62300184	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62300186	0.93[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73800842	0.92[EUR][1000 genomes]
rs73800847	0.87[EUR][1000 genomes]
rs73800857	0.87[EUR][1000 genomes]
rs73800865	0.87[EUR][1000 genomes]
rs73800869	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19480800-19482000	Enhancers	Osteobl	bone

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