Variant report

Variant	rs57920411
Chromosome Location	chr4:19385445-19385446
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10000100	0.82[EUR][1000 genomes]
rs10027425	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10222776	0.95[EUR][1000 genomes]
rs28427059	0.82[EUR][1000 genomes]
rs28582056	0.82[EUR][1000 genomes]
rs28715168	0.82[EUR][1000 genomes]
rs58006599	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60408185	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296407	0.82[EUR][1000 genomes]
rs62296409	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296410	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296411	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296413	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296419	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296446	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296448	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296450	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296454	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296662	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296663	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296664	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296703	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296704	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296705	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296706	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62296708	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62296710	0.87[EUR][1000 genomes]
rs62296737	0.82[EUR][1000 genomes]
rs62296738	0.82[EUR][1000 genomes]
rs62298660	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298661	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298662	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298717	0.88[AMR][1000 genomes]
rs62298730	1.00[EUR][1000 genomes]
rs62298731	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298767	0.82[EUR][1000 genomes]
rs62298770	0.87[EUR][1000 genomes]
rs62298816	0.82[EUR][1000 genomes]
rs62300184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62300186	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800842	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73800847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800857	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73800869	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19382400-19385600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:19383400-19388400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr4:19383400-19388400	Weak transcription	HMEC	breast
4	chr4:19383800-19387600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr4:19383800-19388400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:19383800-19388600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr4:19384400-19385600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:19385000-19388600	Weak transcription	Osteobl	bone

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