Variant report

Variant	rs62298770
Chromosome Location	chr4:19543794-19543795
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10000100	0.95[EUR][1000 genomes]
rs10440273	0.95[EUR][1000 genomes]
rs28427059	0.95[EUR][1000 genomes]
rs28582056	0.95[EUR][1000 genomes]
rs28595109	0.95[EUR][1000 genomes]
rs28630700	0.95[EUR][1000 genomes]
rs28665147	0.95[EUR][1000 genomes]
rs28715168	0.95[EUR][1000 genomes]
rs57920411	0.87[EUR][1000 genomes]
rs58006599	0.87[EUR][1000 genomes]
rs60408185	0.87[EUR][1000 genomes]
rs62296448	0.87[EUR][1000 genomes]
rs62296450	0.87[EUR][1000 genomes]
rs62296451	0.87[EUR][1000 genomes]
rs62296453	0.87[EUR][1000 genomes]
rs62296454	0.87[EUR][1000 genomes]
rs62296662	0.89[EUR][1000 genomes]
rs62296663	0.89[EUR][1000 genomes]
rs62296664	0.89[EUR][1000 genomes]
rs62296703	0.89[EUR][1000 genomes]
rs62296704	0.89[EUR][1000 genomes]
rs62296705	0.89[EUR][1000 genomes]
rs62296706	0.89[EUR][1000 genomes]
rs62296708	0.95[EUR][1000 genomes]
rs62296710	0.90[EUR][1000 genomes]
rs62296737	0.95[EUR][1000 genomes]
rs62296738	0.95[EUR][1000 genomes]
rs62298660	0.87[EUR][1000 genomes]
rs62298661	0.87[EUR][1000 genomes]
rs62298662	0.87[EUR][1000 genomes]
rs62298686	0.87[EUR][1000 genomes]
rs62298687	0.87[EUR][1000 genomes]
rs62298730	0.87[EUR][1000 genomes]
rs62298731	0.87[EUR][1000 genomes]
rs62298732	0.87[EUR][1000 genomes]
rs62298734	0.87[EUR][1000 genomes]
rs62298735	0.87[EUR][1000 genomes]
rs62298738	0.87[EUR][1000 genomes]
rs62298767	0.95[EUR][1000 genomes]
rs62298816	0.95[EUR][1000 genomes]
rs62298824	0.95[EUR][1000 genomes]
rs62298825	0.95[EUR][1000 genomes]
rs62299860	0.95[EUR][1000 genomes]
rs62300184	0.87[EUR][1000 genomes]
rs62300186	0.87[EUR][1000 genomes]
rs73800865	0.87[EUR][1000 genomes]
rs73800869	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv1830015	chr4:19523949-19545872	Enhancers Flanking Active TSS Weak transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19543400-19544000	Active TSS	Osteobl	bone
2	chr4:19543600-19543800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:19543600-19544200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr4:19543600-19544200	Enhancers	Dnd41	blood

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