Variant report

Variant	rs62298825
Chromosome Location	chr4:19570077-19570078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10000100	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10440273	1.00[EUR][1000 genomes]
rs28427059	1.00[EUR][1000 genomes]
rs28582056	1.00[EUR][1000 genomes]
rs28595109	1.00[EUR][1000 genomes]
rs28630700	1.00[EUR][1000 genomes]
rs28665147	1.00[EUR][1000 genomes]
rs28715168	1.00[EUR][1000 genomes]
rs62296662	0.84[EUR][1000 genomes]
rs62296663	0.84[EUR][1000 genomes]
rs62296664	0.84[EUR][1000 genomes]
rs62296703	0.84[EUR][1000 genomes]
rs62296704	0.84[EUR][1000 genomes]
rs62296705	0.84[EUR][1000 genomes]
rs62296706	0.84[EUR][1000 genomes]
rs62296708	0.90[EUR][1000 genomes]
rs62296710	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296737	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296738	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296904	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62296907	0.84[AMR][1000 genomes]
rs62296909	0.84[AMR][1000 genomes]
rs62298686	0.82[EUR][1000 genomes]
rs62298687	0.82[EUR][1000 genomes]
rs62298730	0.82[EUR][1000 genomes]
rs62298731	0.82[EUR][1000 genomes]
rs62298732	0.82[EUR][1000 genomes]
rs62298734	0.82[EUR][1000 genomes]
rs62298735	0.82[EUR][1000 genomes]
rs62298738	0.82[EUR][1000 genomes]
rs62298767	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298770	0.95[EUR][1000 genomes]
rs62298816	1.00[EUR][1000 genomes]
rs62298824	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62299860	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62300184	0.82[EUR][1000 genomes]
rs62300186	0.82[EUR][1000 genomes]
rs73800869	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	esv3441412	chr4:19569804-19571652	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19569400-19570200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:19569400-19571000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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