Variant report

Variant	rs62296904
Chromosome Location	chr4:19680713-19680714
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10000100	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10440273	0.81[EUR][1000 genomes]
rs28427059	0.81[EUR][1000 genomes]
rs28582056	0.81[EUR][1000 genomes]
rs28595109	0.81[EUR][1000 genomes]
rs28630700	0.81[EUR][1000 genomes]
rs28665147	0.81[EUR][1000 genomes]
rs28715168	0.81[EUR][1000 genomes]
rs62295098	0.83[EUR][1000 genomes]
rs62296737	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62296738	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62296882	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62296907	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296909	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62298767	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62298816	0.81[EUR][1000 genomes]
rs62298824	0.81[EUR][1000 genomes]
rs62298825	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62299860	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv829873	chr4:19582263-19742515	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv829874	chr4:19635213-19781102	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv529290	chr4:19658583-20173839	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19679200-19685400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:19680000-19684400	Enhancers	Dnd41	blood
3	chr4:19680400-19681000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:19680600-19681000	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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