Variant report

Variant	rs10000100
Chromosome Location	chr4:19510493-19510494
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10440273	1.00[EUR][1000 genomes]
rs28427059	1.00[EUR][1000 genomes]
rs28582056	1.00[EUR][1000 genomes]
rs28595109	1.00[EUR][1000 genomes]
rs28630700	1.00[EUR][1000 genomes]
rs28665147	1.00[EUR][1000 genomes]
rs28715168	1.00[EUR][1000 genomes]
rs57920411	0.82[EUR][1000 genomes]
rs58006599	0.82[EUR][1000 genomes]
rs60408185	0.82[EUR][1000 genomes]
rs62296419	0.82[EUR][1000 genomes]
rs62296446	0.82[EUR][1000 genomes]
rs62296448	0.82[EUR][1000 genomes]
rs62296450	0.82[EUR][1000 genomes]
rs62296451	0.82[EUR][1000 genomes]
rs62296453	0.82[EUR][1000 genomes]
rs62296454	0.82[EUR][1000 genomes]
rs62296662	0.84[EUR][1000 genomes]
rs62296663	0.84[EUR][1000 genomes]
rs62296664	0.84[EUR][1000 genomes]
rs62296703	0.84[EUR][1000 genomes]
rs62296704	0.84[EUR][1000 genomes]
rs62296705	0.84[EUR][1000 genomes]
rs62296706	0.84[EUR][1000 genomes]
rs62296708	0.90[EUR][1000 genomes]
rs62296710	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62296737	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296738	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296904	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62298660	0.82[EUR][1000 genomes]
rs62298661	0.82[EUR][1000 genomes]
rs62298662	0.82[EUR][1000 genomes]
rs62298686	0.82[EUR][1000 genomes]
rs62298687	0.82[EUR][1000 genomes]
rs62298730	0.82[EUR][1000 genomes]
rs62298731	0.82[EUR][1000 genomes]
rs62298732	0.82[EUR][1000 genomes]
rs62298734	0.82[EUR][1000 genomes]
rs62298735	0.82[EUR][1000 genomes]
rs62298738	0.82[EUR][1000 genomes]
rs62298767	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298770	0.95[EUR][1000 genomes]
rs62298816	1.00[EUR][1000 genomes]
rs62298824	1.00[EUR][1000 genomes]
rs62298825	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62299860	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62300184	0.82[EUR][1000 genomes]
rs62300186	0.82[EUR][1000 genomes]
rs73800857	0.82[EUR][1000 genomes]
rs73800865	0.82[EUR][1000 genomes]
rs73800869	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19509600-19511800	Enhancers	HUVEC	blood vessel
2	chr4:19510400-19510800	Enhancers	Hela-S3	cervix

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