Variant report

Variant	rs28630700
Chromosome Location	chr4:19581154-19581155
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10000100	1.00[EUR][1000 genomes]
rs10440273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28427059	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28582056	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28595109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28665147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28715168	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62296662	0.84[EUR][1000 genomes]
rs62296663	0.84[EUR][1000 genomes]
rs62296664	0.84[EUR][1000 genomes]
rs62296703	0.84[EUR][1000 genomes]
rs62296704	0.84[EUR][1000 genomes]
rs62296705	0.84[EUR][1000 genomes]
rs62296706	0.84[EUR][1000 genomes]
rs62296708	0.90[EUR][1000 genomes]
rs62296710	0.95[EUR][1000 genomes]
rs62296737	1.00[EUR][1000 genomes]
rs62296738	1.00[EUR][1000 genomes]
rs62296904	0.81[EUR][1000 genomes]
rs62298686	0.82[EUR][1000 genomes]
rs62298687	0.82[EUR][1000 genomes]
rs62298730	0.82[EUR][1000 genomes]
rs62298731	0.82[EUR][1000 genomes]
rs62298732	0.82[EUR][1000 genomes]
rs62298734	0.82[EUR][1000 genomes]
rs62298735	0.82[EUR][1000 genomes]
rs62298738	0.82[EUR][1000 genomes]
rs62298767	1.00[EUR][1000 genomes]
rs62298770	0.95[EUR][1000 genomes]
rs62298816	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62298824	1.00[EUR][1000 genomes]
rs62298825	1.00[EUR][1000 genomes]
rs62299860	1.00[EUR][1000 genomes]
rs62300184	0.82[EUR][1000 genomes]
rs62300186	0.82[EUR][1000 genomes]
rs73800869	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv878734	chr4:19474680-19598710	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv461286	chr4:19488871-19709795	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv593786	chr4:19488871-19709795	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19579200-19581400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr4:19579400-19581800	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:19580600-19581600	Weak transcription	Fetal Stomach	stomach
4	chr4:19580800-19581400	Enhancers	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links