Variant report

Variant	rs62298717
Chromosome Location	chr4:19415451-19415452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs57920411	0.88[AMR][1000 genomes]
rs58006599	0.88[AMR][1000 genomes]
rs60408185	0.88[AMR][1000 genomes]
rs62296409	0.88[AMR][1000 genomes]
rs62296410	0.88[AMR][1000 genomes]
rs62296411	0.88[AMR][1000 genomes]
rs62296413	0.88[AMR][1000 genomes]
rs62296415	0.88[AMR][1000 genomes]
rs62296419	0.88[AMR][1000 genomes]
rs62296446	0.88[AMR][1000 genomes]
rs62296448	0.88[AMR][1000 genomes]
rs62296450	0.88[AMR][1000 genomes]
rs62296451	0.88[AMR][1000 genomes]
rs62296453	0.88[AMR][1000 genomes]
rs62296454	0.88[AMR][1000 genomes]
rs62296662	0.88[AMR][1000 genomes]
rs62296663	0.88[AMR][1000 genomes]
rs62296664	0.88[AMR][1000 genomes]
rs62296703	0.88[AMR][1000 genomes]
rs62296704	0.88[AMR][1000 genomes]
rs62296705	0.88[AMR][1000 genomes]
rs62296706	0.88[AMR][1000 genomes]
rs62296708	0.88[AMR][1000 genomes]
rs62298660	0.88[AMR][1000 genomes]
rs62298661	0.88[AMR][1000 genomes]
rs62298662	0.88[AMR][1000 genomes]
rs62298686	0.88[AMR][1000 genomes]
rs62298687	0.88[AMR][1000 genomes]
rs62298731	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62298732	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62298734	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62298735	0.88[AMR][1000 genomes]
rs62298738	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs62300184	0.88[AMR][1000 genomes]
rs62300186	0.88[AMR][1000 genomes]
rs73800847	0.88[AMR][1000 genomes]
rs73800857	0.88[AMR][1000 genomes]
rs73800865	0.88[AMR][1000 genomes]
rs73800869	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19415400-19415600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
2	chr4:19415400-19415600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:19415400-19415600	ZNF genes & repeats	Primary T cells from cord blood	blood
4	chr4:19415400-19415600	Enhancers	Primary hematopoietic stem cells	blood
5	chr4:19415400-19415600	Enhancers	HSMMtube	muscle
6	chr4:19415400-19415600	Enhancers	NH-A	brain
7	chr4:19415400-19415600	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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