Variant report

Variant	rs62296407
Chromosome Location	chr4:19298844-19298845
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10027425	0.84[EUR][1000 genomes]
rs10222776	0.87[EUR][1000 genomes]
rs1026681	0.86[AFR][1000 genomes]
rs16898168	0.89[AFR][1000 genomes]
rs2199596	0.82[AFR][1000 genomes]
rs57920411	0.82[EUR][1000 genomes]
rs58006599	0.82[EUR][1000 genomes]
rs59688283	0.81[AFR][1000 genomes]
rs60283600	0.82[AFR][1000 genomes]
rs60408185	0.82[EUR][1000 genomes]
rs62296409	0.87[EUR][1000 genomes]
rs62296410	0.87[EUR][1000 genomes]
rs62296411	0.87[EUR][1000 genomes]
rs62296413	0.82[EUR][1000 genomes]
rs62296415	0.82[EUR][1000 genomes]
rs62296419	0.82[EUR][1000 genomes]
rs62296446	0.82[EUR][1000 genomes]
rs62296448	0.82[EUR][1000 genomes]
rs62296450	0.82[EUR][1000 genomes]
rs62296451	0.82[EUR][1000 genomes]
rs62296453	0.82[EUR][1000 genomes]
rs62296454	0.82[EUR][1000 genomes]
rs62296662	0.84[EUR][1000 genomes]
rs62296663	0.84[EUR][1000 genomes]
rs62296664	0.84[EUR][1000 genomes]
rs62296703	0.84[EUR][1000 genomes]
rs62296704	0.84[EUR][1000 genomes]
rs62296705	0.84[EUR][1000 genomes]
rs62296706	0.84[EUR][1000 genomes]
rs62296708	0.89[EUR][1000 genomes]
rs62296710	0.84[EUR][1000 genomes]
rs62298660	0.82[EUR][1000 genomes]
rs62298661	0.82[EUR][1000 genomes]
rs62298662	0.82[EUR][1000 genomes]
rs62298686	0.82[EUR][1000 genomes]
rs62298687	0.82[EUR][1000 genomes]
rs62298730	0.82[EUR][1000 genomes]
rs62298731	0.82[EUR][1000 genomes]
rs62298732	0.82[EUR][1000 genomes]
rs62298734	0.82[EUR][1000 genomes]
rs62298735	0.82[EUR][1000 genomes]
rs62298738	0.82[EUR][1000 genomes]
rs62300184	0.82[EUR][1000 genomes]
rs62300186	0.82[EUR][1000 genomes]
rs73800807	0.81[AFR][1000 genomes]
rs73800842	0.87[EUR][1000 genomes]
rs73800847	0.82[EUR][1000 genomes]
rs73800857	0.82[EUR][1000 genomes]
rs73800865	0.82[EUR][1000 genomes]
rs73800869	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461282	chr4:19035608-19304946	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593782	chr4:19035608-19304946	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv878726	chr4:19038807-19304946	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv829869	chr4:19128282-19310464	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19297600-19302800	Weak transcription	NHLF	lung

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