Variant report

Variant	rs16898193
Chromosome Location	chr4:19300647-19300648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10015294	0.83[ASN][1000 genomes]
rs10032629	0.83[ASN][1000 genomes]
rs10212992	0.90[ASN][1000 genomes]
rs10222776	0.86[ASN][1000 genomes]
rs11940870	0.89[CHB][hapmap];0.94[JPT][hapmap]
rs11943058	0.88[ASN][1000 genomes]
rs13434929	0.85[ASN][1000 genomes]
rs1388145	0.91[ASN][1000 genomes]
rs1388148	0.88[ASN][1000 genomes]
rs28445313	0.87[ASN][1000 genomes]
rs28468581	0.83[ASN][1000 genomes]
rs28584356	0.88[ASN][1000 genomes]
rs28612466	0.87[ASN][1000 genomes]
rs28675174	0.83[ASN][1000 genomes]
rs28809022	0.83[ASN][1000 genomes]
rs28849735	0.83[ASN][1000 genomes]
rs59192349	0.91[ASN][1000 genomes]
rs62298737	0.83[ASN][1000 genomes]
rs73092965	0.83[ASN][1000 genomes]
rs73092970	0.83[ASN][1000 genomes]
rs73092977	0.83[ASN][1000 genomes]
rs73092981	0.83[ASN][1000 genomes]
rs73092983	0.83[ASN][1000 genomes]
rs73092984	0.83[ASN][1000 genomes]
rs73110735	0.88[ASN][1000 genomes]
rs73110746	0.85[ASN][1000 genomes]
rs73800842	0.88[ASN][1000 genomes]
rs982066	0.88[ASN][1000 genomes]
rs982067	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461282	chr4:19035608-19304946	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv593782	chr4:19035608-19304946	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv878726	chr4:19038807-19304946	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1010078	chr4:19079379-19386522	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv829869	chr4:19128282-19310464	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv829872	chr4:19268282-19432872	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19297600-19302800	Weak transcription	NHLF	lung
2	chr4:19300600-19301200	Enhancers	Fetal Heart	heart
3	chr4:19300600-19301800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:19300600-19301800	Enhancers	Fetal Stomach	stomach
5	chr4:19300600-19302200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:19300600-19303000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:19300600-19303400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links