Variant report

Variant	rs11943773
Chromosome Location	chr4:19451000-19451001
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10006103	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10006299	0.90[ASN][1000 genomes]
rs10009772	0.87[ASN][1000 genomes]
rs10012861	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10015294	0.85[ASN][1000 genomes]
rs10025775	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10028337	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10032188	0.87[ASN][1000 genomes]
rs10032629	0.85[ASN][1000 genomes]
rs10034324	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10222803	0.90[ASN][1000 genomes]
rs10222907	0.90[ASN][1000 genomes]
rs10222971	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10223045	0.90[ASN][1000 genomes]
rs10470799	0.84[ASN][1000 genomes]
rs11941599	0.86[ASN][1000 genomes]
rs11941815	0.89[ASN][1000 genomes]
rs11945412	0.86[ASN][1000 genomes]
rs11946126	0.89[ASN][1000 genomes]
rs1388148	0.80[ASN][1000 genomes]
rs28392619	0.90[ASN][1000 genomes]
rs28406392	0.86[ASN][1000 genomes]
rs28468581	0.85[ASN][1000 genomes]
rs28505527	0.86[ASN][1000 genomes]
rs28506946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28584356	0.80[ASN][1000 genomes]
rs28625215	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28649908	0.86[ASN][1000 genomes]
rs28654609	0.90[ASN][1000 genomes]
rs28662302	0.86[ASN][1000 genomes]
rs28675174	0.85[ASN][1000 genomes]
rs28698715	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28713269	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28749929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28809022	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28834385	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28849735	0.85[ASN][1000 genomes]
rs28861473	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4541506	0.86[ASN][1000 genomes]
rs4637398	0.86[ASN][1000 genomes]
rs59810064	0.86[ASN][1000 genomes]
rs60069867	0.86[ASN][1000 genomes]
rs62296707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62296709	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62298737	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6837423	0.86[ASN][1000 genomes]
rs73092965	0.85[ASN][1000 genomes]
rs73092970	0.85[ASN][1000 genomes]
rs73092977	0.85[ASN][1000 genomes]
rs73092981	0.85[ASN][1000 genomes]
rs73092983	0.85[ASN][1000 genomes]
rs73092984	0.85[ASN][1000 genomes]
rs73097402	0.86[ASN][1000 genomes]
rs73099604	0.86[ASN][1000 genomes]
rs73099613	0.86[ASN][1000 genomes]
rs73099658	0.86[ASN][1000 genomes]
rs73110735	0.80[ASN][1000 genomes]
rs982066	0.80[ASN][1000 genomes]
rs982067	0.80[ASN][1000 genomes]
rs9990468	0.86[ASN][1000 genomes]
rs9998589	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv593785	chr4:19092157-19521956	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv878732	chr4:19172031-19660947	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv878733	chr4:19335464-19928602	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:19451000-19455000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links