Variant report

Variant	rs16868851
Chromosome Location	chr5:89914134-89914135
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89822248..89824854-chr5:89913620..89915921,2	K562	blood:
2	chr5:89908527..89910983-chr5:89912943..89914483,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12108970	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109253	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504986	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868834	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868842	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868848	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868853	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868854	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926055	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61740119	1.00[AMR][1000 genomes]
rs73179766	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179768	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179771	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179774	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179793	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181609	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181642	1.00[AMR][1000 genomes]
rs73181647	1.00[AMR][1000 genomes]
rs73181653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89902600-89917400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:89909800-89919600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:89909800-89923200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr5:89909800-89923200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:89909800-89926400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr5:89909800-89928800	Weak transcription	Fetal Brain Female	brain
7	chr5:89910000-89927000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr5:89910000-89928600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:89910600-89916800	Weak transcription	K562	blood
10	chr5:89911200-89915400	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr5:89911800-89915600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:89912600-89915400	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:89912800-89915400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:89913400-89914200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:89913800-89914200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
16	chr5:89913800-89914200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:89913800-89914400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:89913800-89914600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:89914000-89914200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr5:89914000-89919400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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