Variant report

Variant	rs73179774
Chromosome Location	chr5:89903191-89903192
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:89902314..89904389-chr5:89906199..89907994,3	K562	blood:
2	chr5:89769479..89771079-chr5:89902618..89904639,2	MCF-7	breast:
3	chr5:89895280..89897883-chr5:89902779..89905388,2	K562	blood:
4	chr5:89767614..89772956-chr5:89898929..89905987,8	K562	blood:
5	chr5:89782175..89784403-chr5:89901956..89904362,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176055	Chromatin interaction
ENSG00000113356	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs12108970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1504997	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868834	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868851	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16868854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs41304890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56926055	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58741440	1.00[AFR][1000 genomes]
rs58953839	1.00[AFR][1000 genomes]
rs61201553	1.00[AFR][1000 genomes]
rs61740119	1.00[AMR][1000 genomes]
rs73176094	1.00[AFR][1000 genomes]
rs73176098	1.00[AFR][1000 genomes]
rs73177824	1.00[AFR][1000 genomes]
rs73177825	1.00[AFR][1000 genomes]
rs73179713	1.00[AFR][1000 genomes]
rs73179740	1.00[AFR][1000 genomes]
rs73179766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179768	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73179793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181603	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181619	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181640	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73181642	1.00[AMR][1000 genomes]
rs73181647	1.00[AMR][1000 genomes]
rs73181653	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv432751	chr5:89457044-90090444	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv933668	chr5:89854253-89999672	Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:89892800-89909000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:89893000-89907800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr5:89895000-89907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr5:89900400-89903200	Enhancers	K562	blood
5	chr5:89901000-89908200	Weak transcription	GM12878-XiMat	blood
6	chr5:89902000-89903400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:89902600-89917400	Weak transcription	H1 Cell Line	embryonic stem cell

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