Variant report

Variant	rs16869675
Chromosome Location	chr5:17282825-17282826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:17219127..17220679-chr5:17282330..17284104,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10054841	1.00[AMR][1000 genomes]
rs10066461	1.00[AMR][1000 genomes]
rs58489807	1.00[EUR][1000 genomes]
rs59036563	1.00[EUR][1000 genomes]
rs61208414	1.00[EUR][1000 genomes]
rs6892415	1.00[EUR][1000 genomes]
rs73052868	1.00[EUR][1000 genomes]
rs73052876	1.00[EUR][1000 genomes]
rs73054812	1.00[EUR][1000 genomes]
rs73054826	1.00[EUR][1000 genomes]
rs73054833	1.00[EUR][1000 genomes]
rs73054835	1.00[EUR][1000 genomes]
rs73054838	1.00[EUR][1000 genomes]
rs73054842	1.00[EUR][1000 genomes]
rs7711635	1.00[EUR][1000 genomes]
rs7731019	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880277	chr5:16829442-17316288	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv830218	chr5:17093162-17290045	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1029959	chr5:17133214-17455995	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:17276400-17283200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:17276600-17283800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr5:17276600-17285400	Enhancers	Primary B cells from peripheral blood	blood
4	chr5:17277800-17284800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:17277800-17290600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:17278000-17287400	Weak transcription	Hela-S3	cervix
7	chr5:17279400-17284600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:17282000-17283000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:17282000-17283200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:17282200-17283000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr5:17282200-17283000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:17282200-17283000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr5:17282200-17283000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr5:17282400-17283000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr5:17282400-17283000	Enhancers	A549	lung
16	chr5:17282400-17283200	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr5:17282400-17283200	Flanking Active TSS	Primary B cells from cord blood	blood
18	chr5:17282400-17283200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:17282400-17283400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr5:17282400-17283400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr5:17282600-17283000	Active TSS	Brain Hippocampus Middle	brain
22	chr5:17282600-17283000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr5:17282600-17283200	Enhancers	Fetal Brain Male	brain
24	chr5:17282800-17283000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr5:17282800-17283000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:17282800-17283200	Flanking Active TSS	GM12878-XiMat	blood

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