Variant report
Variant | rs6892415 |
---|---|
Chromosome Location | chr5:17328352-17328353 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr5:17305761..17307805-chr5:17326466..17329202,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000185296 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs16869675 | 1.00[EUR][1000 genomes] |
rs58489807 | 1.00[EUR][1000 genomes] |
rs59036563 | 1.00[EUR][1000 genomes] |
rs61208414 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73052866 | 0.82[AFR][1000 genomes] |
rs73052868 | 0.88[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73052876 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs73054812 | 1.00[EUR][1000 genomes] |
rs73054826 | 1.00[EUR][1000 genomes] |
rs73054833 | 1.00[EUR][1000 genomes] |
rs73054835 | 1.00[EUR][1000 genomes] |
rs73054838 | 1.00[EUR][1000 genomes] |
rs73054842 | 1.00[EUR][1000 genomes] |
rs7711635 | 1.00[EUR][1000 genomes] |
rs7731019 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029959 | chr5:17133214-17455995 | Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 38 gene(s) | inside rSNPs | diseases |
2 | nsv461988 | chr5:17296342-17484038 | Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
3 | nsv597313 | chr5:17296342-17484038 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 26 gene(s) | inside rSNPs | diseases |
4 | nsv830219 | chr5:17325802-17518914 | Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 32 gene(s) | inside rSNPs | diseases |
No data |