Variant report

Variant	rs16871174
Chromosome Location	chr6:11268181-11268182
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11233871..11236036-chr6:11265785..11268421,2	MCF-7	breast:
2	chr6:11267550..11270489-chr6:11275291..11276869,2	K562	blood:
3	chr6:11261999..11264765-chr6:11266372..11268491,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16871252	1.00[CHB][hapmap]
rs6900129	1.00[CHB][hapmap]
rs9468809	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11252400-11271000	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:11259600-11270800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:11259600-11271600	Weak transcription	Fetal Thymus	thymus
4	chr6:11259600-11274600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:11259600-11275800	Weak transcription	Thymus	Thymus
6	chr6:11259600-11277800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr6:11260400-11271600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:11260800-11276600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr6:11261400-11271600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:11261400-11272200	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:11261400-11272600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:11261400-11272800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:11261400-11275800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:11261400-11276000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:11261600-11275200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr6:11262800-11272600	Weak transcription	GM12878-XiMat	blood
17	chr6:11263800-11270400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:11263800-11270800	Weak transcription	Colon Smooth Muscle	Colon
19	chr6:11264000-11270400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:11264000-11271200	Weak transcription	Left Ventricle	heart
21	chr6:11264200-11269200	Weak transcription	Hela-S3	cervix
22	chr6:11264200-11269200	Weak transcription	HepG2	liver
23	chr6:11264200-11269600	Weak transcription	Liver	Liver
24	chr6:11264200-11270400	Weak transcription	Fetal Kidney	kidney
25	chr6:11264400-11269200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:11264400-11269600	Weak transcription	A549	lung
27	chr6:11264400-11270000	Weak transcription	Placenta	Placenta
28	chr6:11264400-11271000	Weak transcription	Small Intestine	intestine
29	chr6:11264400-11272800	Weak transcription	Adipose Nuclei	Adipose
30	chr6:11264400-11276600	Weak transcription	Spleen	Spleen
31	chr6:11264600-11269400	Weak transcription	Gastric	stomach
32	chr6:11264600-11269400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:11264600-11270000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:11264600-11270000	Weak transcription	Ovary	ovary
35	chr6:11264600-11270000	Weak transcription	Pancreas	Pancrea
36	chr6:11264600-11270000	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr6:11264600-11271000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr6:11264600-11271000	Weak transcription	Right Atrium	heart
39	chr6:11264600-11271600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr6:11264600-11271600	Weak transcription	Esophagus	oesophagus
41	chr6:11264600-11275000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:11264600-11275200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:11264800-11269400	Weak transcription	Stomach Mucosa	stomach
44	chr6:11264800-11270600	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr6:11264800-11271000	Weak transcription	Primary T cells from cord blood	blood
46	chr6:11264800-11274600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr6:11266600-11278800	Enhancers	Fetal Intestine Large	intestine
48	chr6:11267000-11268200	Strong transcription	Primary B cells from cord blood	blood
49	chr6:11267000-11268200	Enhancers	Fetal Intestine Small	intestine
50	chr6:11267000-11268400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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