Variant report

Variant	rs9468809
Chromosome Location	chr6:11292288-11292289
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11286486..11288552-chr6:11291874..11293512,2	K562	blood:
2	chr6:11281338..11286623-chr6:11287034..11292719,6	K562	blood:
3	chr6:11229897..11233215-chr6:11287734..11292483,5	MCF-7	breast:
4	chr6:11258462..11260169-chr6:11290978..11292605,2	MCF-7	breast:
5	chr6:11290862..11293594-chr6:11296720..11298470,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16871174	1.00[CHB][hapmap]
rs16871252	1.00[CHB][hapmap]
rs6900129	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11276200-11295800	Weak transcription	Thymus	Thymus
2	chr6:11276600-11295600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:11277000-11292400	Weak transcription	Fetal Thymus	thymus
4	chr6:11277600-11296000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:11278000-11295400	Strong transcription	Primary B cells from cord blood	blood
6	chr6:11278600-11295000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr6:11278600-11299000	Weak transcription	Pancreas	Pancrea
8	chr6:11279000-11305000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:11279200-11292600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:11279600-11292800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:11279800-11292400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:11281600-11295600	Weak transcription	Spleen	Spleen
13	chr6:11281800-11295000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:11282800-11295800	Weak transcription	Lung	lung
15	chr6:11284400-11292400	Weak transcription	Small Intestine	intestine
16	chr6:11286600-11300200	Strong transcription	Primary B cells from peripheral blood	blood
17	chr6:11287000-11292800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:11287400-11298000	Strong transcription	Primary T cells from cord blood	blood
19	chr6:11287600-11294600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:11288200-11292600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:11288800-11292400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr6:11289000-11294200	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:11289000-11299400	Weak transcription	Gastric	stomach
24	chr6:11289200-11292400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr6:11289400-11292400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:11289400-11297000	Weak transcription	Stomach Mucosa	stomach
27	chr6:11290400-11293000	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr6:11290600-11299800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
29	chr6:11291000-11292600	Weak transcription	Placenta	Placenta
30	chr6:11291400-11292400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr6:11291600-11293000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr6:11291600-11293400	Enhancers	HepG2	liver
33	chr6:11291800-11293000	Enhancers	Placenta Amnion	Placenta Amnion
34	chr6:11291800-11293200	Enhancers	Fetal Intestine Large	intestine
35	chr6:11291800-11293400	Enhancers	Fetal Intestine Small	intestine
36	chr6:11292000-11292400	Enhancers	GM12878-XiMat	blood
37	chr6:11292200-11292800	Enhancers	Duodenum Mucosa	Duodenum
38	chr6:11292200-11293000	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr6:11292200-11293200	Strong transcription	Primary T helper cells fromperipheralblood	blood

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