Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12513713	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12513719	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12516454	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12518202	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12518226	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518664	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12523305	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16871312	0.85[YRI][hapmap]
rs17205636	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2876938	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs318837	0.82[ASW][hapmap]
rs318845	0.82[ASW][hapmap]
rs6451574	0.86[GIH][hapmap];0.87[MEX][hapmap]
rs672658	1.00[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]
rs672659	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs73077908	0.89[AFR][1000 genomes]
rs7713704	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7719641	0.81[CEU][hapmap]
rs7732708	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7734535	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7735118	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16871303	OSMR	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41370800-41379200	Weak transcription	Aorta	Aorta
2	chr5:41371400-41380400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:41371800-41380200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:41372000-41389400	Weak transcription	Ovary	ovary
5	chr5:41375200-41390800	Weak transcription	Right Ventricle	heart
6	chr5:41375400-41376800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr5:41375400-41381400	Weak transcription	Left Ventricle	heart
8	chr5:41375600-41381400	Enhancers	Fetal Heart	heart

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