Variant report

Variant	rs672658
Chromosome Location	chr5:41408040-41408041
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12513713	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12513719	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12516454	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12518202	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12518226	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12518664	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12523305	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1380998	1.00[JPT][hapmap]
rs1551574	1.00[JPT][hapmap]
rs16871303	1.00[CEU][hapmap];0.92[GIH][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17205636	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2289786	1.00[JPT][hapmap]
rs2876938	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs318035	1.00[JPT][hapmap]
rs318036	1.00[JPT][hapmap]
rs319005	1.00[JPT][hapmap]
rs319011	1.00[JPT][hapmap]
rs319012	1.00[JPT][hapmap]
rs6451574	0.93[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap]
rs672659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7713704	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7715750	1.00[JPT][hapmap]
rs7719641	0.81[CEU][hapmap]
rs7732708	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7734535	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7735118	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs672658	OSMR	cis	parietal	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41389800-41409000	Weak transcription	Ovary	ovary
2	chr5:41392400-41409400	Weak transcription	Right Ventricle	heart
3	chr5:41392600-41408400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:41404000-41412000	Enhancers	Fetal Heart	heart
5	chr5:41404800-41409800	Enhancers	Fetal Intestine Large	intestine
6	chr5:41405400-41410600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:41405800-41408800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:41405800-41410000	Enhancers	Fetal Intestine Small	intestine
9	chr5:41407200-41408800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr5:41407200-41409200	Weak transcription	Left Ventricle	heart
11	chr5:41407200-41409400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr5:41407400-41408800	Enhancers	A549	lung
13	chr5:41407400-41410600	Weak transcription	Pancreas	Pancrea
14	chr5:41407800-41408800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:41407800-41409000	Weak transcription	HepG2	liver

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