Variant report

Variant	rs16871320
Chromosome Location	chr8:105363182-105363183
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12681468	0.86[ASN][1000 genomes]
rs1964710	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1987499	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap]
rs2333868	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2333869	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2333877	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2333878	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3808395	0.94[CHB][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs3824155	0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3824156	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs58011800	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59703453	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59866013	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60452991	0.86[ASN][1000 genomes]
rs61459214	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105356200-105364200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:105357600-105365000	Weak transcription	Right Atrium	heart
3	chr8:105358800-105364000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:105360000-105364200	Weak transcription	Fetal Lung	lung
5	chr8:105361600-105368600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr8:105362000-105364000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:105362000-105364400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr8:105362600-105363600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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