Variant report

Variant	rs3808395
Chromosome Location	chr8:105350079-105350080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12681468	0.88[ASN][1000 genomes]
rs16871320	0.94[CHB][hapmap];0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1964710	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1987499	1.00[CHB][hapmap];1.00[YRI][hapmap]
rs2333868	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2333869	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2333877	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2333878	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3824155	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3824156	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58011800	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59703453	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59866013	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60452991	0.88[ASN][1000 genomes]
rs61459214	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105343200-105354400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:105347400-105351000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr8:105348000-105351800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr8:105348200-105350200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:105349000-105352000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:105349000-105352600	Enhancers	Osteobl	bone
7	chr8:105349400-105350400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:105349400-105350600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr8:105349400-105350600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:105349400-105351200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:105349400-105352400	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr8:105349400-105358800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr8:105349600-105350600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr8:105349600-105350800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:105349600-105351000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:105349600-105351600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:105349600-105358200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr8:105349800-105350800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:105349800-105350800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr8:105349800-105350800	Weak transcription	NHDF-Ad	bronchial
21	chr8:105349800-105351000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:105349800-105351000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:105349800-105351000	Weak transcription	HMEC	breast
24	chr8:105349800-105351200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr8:105349800-105352400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr8:105349800-105352600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:105350000-105351000	Weak transcription	NH-A	brain

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