Variant report

Variant	rs16871352
Chromosome Location	chr6:11439828-11439829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28854540	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62394953	1.00[ASN][1000 genomes]
rs62395341	1.00[ASN][1000 genomes]
rs6919600	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6939638	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11435200-11441000	Weak transcription	Fetal Brain Male	brain
2	chr6:11437800-11440000	Enhancers	HUVEC	blood vessel
3	chr6:11438600-11442400	Weak transcription	HepG2	liver
4	chr6:11438600-11442600	Weak transcription	Stomach Mucosa	stomach
5	chr6:11439000-11440000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr6:11439200-11440000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:11439200-11440000	Enhancers	Primary B cells from cord blood	blood
8	chr6:11439200-11440000	Enhancers	Primary B cells from peripheral blood	blood
9	chr6:11439200-11440000	Enhancers	Small Intestine	intestine
10	chr6:11439200-11440200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr6:11439600-11442600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:11439800-11440000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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