Variant report

Variant	rs62395341
Chromosome Location	chr6:11345774-11345775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:11345749..11347877-chr6:11349649..11352188,2	MCF-7	breast:
2	chr6:11343828..11346544-chr6:11366982..11368988,2	MCF-7	breast:
3	chr6:11342539..11346028-chr6:11385686..11392115,8	MCF-7	breast:
4	chr6:11316359..11321416-chr6:11341732..11346793,9	MCF-7	breast:
5	chr6:11344982..11346755-chr6:11356933..11360396,3	MCF-7	breast:
6	chr6:11343010..11348187-chr6:11388549..11393263,7	MCF-7	breast:
7	chr6:11345079..11346896-chr6:11363050..11365250,2	K562	blood:
8	chr6:11344739..11346920-chr6:11347451..11351924,4	MCF-7	breast:
9	chr6:11229829..11235323-chr6:11341380..11347788,11	MCF-7	breast:
10	chr6:11341903..11348078-chr6:11354165..11360055,8	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16871352	1.00[ASN][1000 genomes]
rs28854540	1.00[ASN][1000 genomes]
rs6919600	1.00[ASN][1000 genomes]
rs6939638	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11330400-11350800	Weak transcription	Lung	lung
2	chr6:11331400-11347200	Weak transcription	Spleen	Spleen
3	chr6:11331600-11348200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:11332200-11352400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:11332400-11346400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:11334000-11353600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr6:11334200-11350800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:11341800-11347400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:11341800-11350600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:11341800-11350800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:11342000-11354800	Weak transcription	Aorta	Aorta
12	chr6:11342400-11345800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:11342400-11349600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:11343000-11347600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:11343200-11348000	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr6:11343400-11346600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr6:11344000-11346200	Enhancers	Duodenum Mucosa	Duodenum
18	chr6:11344000-11346400	Enhancers	Stomach Mucosa	stomach
19	chr6:11344000-11346600	Enhancers	Fetal Intestine Large	intestine
20	chr6:11344000-11347000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr6:11344000-11347600	Strong transcription	Primary T cells from cord blood	blood
22	chr6:11344200-11346400	Enhancers	Fetal Intestine Small	intestine
23	chr6:11344200-11347200	Enhancers	GM12878-XiMat	blood
24	chr6:11344200-11347600	Enhancers	HepG2	liver
25	chr6:11344400-11346200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr6:11344600-11346400	Genic enhancers	Primary B cells from peripheral blood	blood
27	chr6:11344800-11345800	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr6:11344800-11347000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr6:11344800-11348000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:11345000-11346800	Weak transcription	Fetal Thymus	thymus
31	chr6:11345000-11349800	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr6:11345200-11346400	Strong transcription	Primary B cells from cord blood	blood
33	chr6:11345200-11347000	Enhancers	Placenta	Placenta
34	chr6:11345200-11347000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr6:11345400-11345800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
36	chr6:11345400-11347000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr6:11345400-11347000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr6:11345600-11346600	Genic enhancers	Primary T cells fromperipheralblood	blood
39	chr6:11345600-11346600	Weak transcription	A549	lung
40	chr6:11345600-11352200	Weak transcription	Thymus	Thymus

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