The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs16871509
Chromosome Location
chr5:71022222-71022223
allele
A/C
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:1)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:1 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr5:70882801..70885185-chr5:71020479..71022415,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000131844
Chromatin interaction
Extended variants information (count: 8 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:8)
rs_ID
r
2
[population]
rs4057258
0.90[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4057259
0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs60286869
0.94[ASN][1000 genomes]
rs62360705
0.94[ASN][1000 genomes]
rs62360707
0.92[ASN][1000 genomes]
rs62360710
0.91[ASN][1000 genomes]
rs62360711
0.83[ASN][1000 genomes]
rs6891713
0.86[JPT][hapmap]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links