Variant report
| Variant | rs4057259 |
|---|---|
| Chromosome Location | chr5:71029730-71029731 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:71014736..71016735-chr5:71029245..71030836,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000164326 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs16871509 | 0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs16872110 | 0.81[CHB][hapmap] |
| rs4057258 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59245253 | 0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs60286869 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62360705 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62360707 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62360710 | 0.94[ASN][1000 genomes] |
| rs62360711 | 0.86[ASN][1000 genomes] |
| rs6869080 | 0.85[EUR][1000 genomes] |
| rs6891713 | 0.89[CHB][hapmap];0.85[JPT][hapmap] |
| rs72769463 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
