Variant report

Variant	rs16871898
Chromosome Location	chr6:44402907-44402908
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10484624	1.00[ASN][1000 genomes]
rs11571939	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11571948	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11571956	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11571963	1.00[ASN][1000 genomes]
rs11571999	1.00[ASN][1000 genomes]
rs11572021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16871891	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16871894	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019145	chr6:44313576-44421440	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv885858	chr6:44385441-44421240	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv885859	chr6:44385441-44422466	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv517370	chr6:44385441-44422689	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv1850024	chr6:44388505-44422689	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44358400-44403800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:44376800-44424400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:44385200-44403200	Weak transcription	Gastric	stomach
4	chr6:44386600-44409200	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:44386800-44404200	Strong transcription	Fetal Thymus	thymus
6	chr6:44386800-44405000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:44386800-44406400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:44386800-44408800	Strong transcription	Primary B cells from peripheral blood	blood
9	chr6:44387000-44403400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:44387000-44403600	Strong transcription	Primary T helper cells PMA-I stimulated	--
11	chr6:44387000-44405000	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr6:44387000-44405400	Strong transcription	Primary hematopoietic stem cells	blood
13	chr6:44387000-44408000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr6:44387400-44403800	Strong transcription	Dnd41	blood
15	chr6:44387600-44408600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:44388400-44424400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:44388800-44403200	Weak transcription	Pancreas	Pancrea
18	chr6:44388800-44409800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:44390000-44404600	Weak transcription	Stomach Mucosa	stomach
20	chr6:44390200-44409600	Weak transcription	Spleen	Spleen
21	chr6:44390200-44420200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:44390400-44403400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:44391800-44409800	Weak transcription	Aorta	Aorta
24	chr6:44391800-44412600	Weak transcription	Brain Hippocampus Middle	brain
25	chr6:44392800-44403200	Weak transcription	Psoas Muscle	Psoas
26	chr6:44392800-44407000	Weak transcription	Ovary	ovary
27	chr6:44392800-44411800	Weak transcription	Esophagus	oesophagus
28	chr6:44393600-44411600	Weak transcription	Right Ventricle	heart
29	chr6:44394600-44407800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:44394800-44410000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:44395200-44407000	Weak transcription	NHEK	skin
32	chr6:44395200-44407200	Weak transcription	HMEC	breast
33	chr6:44395400-44408800	Weak transcription	HUVEC	blood vessel
34	chr6:44396600-44407000	Weak transcription	Osteobl	bone
35	chr6:44396600-44432800	Weak transcription	Fetal Kidney	kidney
36	chr6:44397200-44409800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr6:44397400-44404400	Weak transcription	Fetal Brain Female	brain
38	chr6:44397400-44409800	Weak transcription	Fetal Brain Male	brain
39	chr6:44397800-44408600	Weak transcription	Brain Germinal Matrix	brain
40	chr6:44398200-44413400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr6:44398200-44413400	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr6:44398400-44403200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr6:44398400-44403200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:44398400-44407000	Weak transcription	NHLF	lung
45	chr6:44398400-44407200	Weak transcription	Thymus	Thymus
46	chr6:44398400-44409800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:44398400-44410000	Weak transcription	Brain Anterior Caudate	brain
48	chr6:44398400-44411800	Weak transcription	Lung	lung
49	chr6:44398400-44413600	Weak transcription	Brain Angular Gyrus	brain
50	chr6:44398400-44415400	Weak transcription	Small Intestine	intestine

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