Variant report

Variant	rs16871899
Chromosome Location	chr6:11846987-11846988
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13207164	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6907807	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918324	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11844600-11854000	Weak transcription	NHLF	lung
2	chr6:11845600-11847000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:11845600-11847000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:11845600-11847000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:11845600-11847200	Enhancers	HMEC	breast
6	chr6:11845600-11848400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:11845800-11847200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:11845800-11847200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:11845800-11847200	Enhancers	Pancreas	Pancrea
10	chr6:11845800-11847200	Enhancers	NHEK	skin
11	chr6:11846200-11847000	Enhancers	Liver	Liver
12	chr6:11846600-11847200	Enhancers	Placenta	Placenta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links