Variant report

Variant	rs6907807
Chromosome Location	chr6:11854086-11854087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11854081..11855921-chr6:11860130..11862778,2	MCF-7	breast:
2	chr6:11848626..11851271-chr6:11851850..11855072,3	K562	blood:
3	chr6:11843056..11848062-chr6:11852373..11856845,8	K562	blood:
4	chr6:11853455..11855505-chr6:11871944..11874636,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13207164	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16871899	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6918324	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11847000-11854800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:11847200-11854600	Weak transcription	Gastric	stomach
3	chr6:11849800-11854600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr6:11850000-11854800	Weak transcription	HUVEC	blood vessel
5	chr6:11850400-11854800	Weak transcription	Pancreas	Pancrea
6	chr6:11851800-11854600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:11852000-11854600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr6:11852000-11854600	Weak transcription	NHEK	skin
9	chr6:11852000-11866200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:11852200-11854400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:11852400-11854600	Weak transcription	Hela-S3	cervix
12	chr6:11852400-11854600	Weak transcription	NHDF-Ad	bronchial
13	chr6:11852400-11855000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:11852600-11854200	Enhancers	Fetal Brain Male	brain
15	chr6:11852600-11854600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:11852600-11854600	Enhancers	Liver	Liver
17	chr6:11852600-11854800	Weak transcription	HMEC	breast
18	chr6:11852600-11855200	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:11852600-11855200	Enhancers	Fetal Lung	lung
20	chr6:11852600-11855200	Enhancers	Fetal Stomach	stomach
21	chr6:11852800-11854600	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:11852800-11854800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr6:11852800-11855400	Enhancers	Fetal Muscle Leg	muscle
24	chr6:11853000-11854200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr6:11853000-11855200	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr6:11853200-11854200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:11853200-11854400	Weak transcription	Psoas Muscle	Psoas
28	chr6:11853200-11854800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:11853200-11855200	Enhancers	Colon Smooth Muscle	Colon
30	chr6:11853200-11855400	Enhancers	Monocytes-CD14+_RO01746	blood
31	chr6:11853800-11855200	Enhancers	Primary hematopoietic stem cells	blood
32	chr6:11853800-11855200	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr6:11853800-11855200	Enhancers	Stomach Mucosa	stomach
34	chr6:11853800-11855600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr6:11853800-11855600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr6:11854000-11854200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr6:11854000-11854200	Enhancers	Brain Inferior Temporal Lobe	brain
38	chr6:11854000-11854200	Enhancers	Small Intestine	intestine
39	chr6:11854000-11854200	Flanking Active TSS	GM12878-XiMat	blood
40	chr6:11854000-11854200	Enhancers	HSMM	muscle
41	chr6:11854000-11854200	Enhancers	NH-A	brain
42	chr6:11854000-11854800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:11854000-11854800	Enhancers	Brain Cingulate Gyrus	brain
44	chr6:11854000-11855000	Enhancers	Ovary	ovary
45	chr6:11854000-11855200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr6:11854000-11855200	Enhancers	Adipose Nuclei	Adipose
47	chr6:11854000-11855200	Enhancers	Aorta	Aorta
48	chr6:11854000-11855200	Enhancers	HSMMtube	muscle
49	chr6:11854000-11855200	Enhancers	NHLF	lung
50	chr6:11854000-11855800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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