Variant report

Variant	rs16872008
Chromosome Location	chr6:44476779-44476780
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1322668	0.87[ASN][1000 genomes]
rs1575364	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41273650	0.82[EUR][1000 genomes]
rs4432970	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs4437456	0.89[CEU][hapmap];0.86[GIH][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes]
rs752287	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs752288	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs764332	0.95[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44462000-44479200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:44467600-44479200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:44475600-44477200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:44475800-44477200	Enhancers	Osteobl	bone
5	chr6:44476000-44477000	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:44476000-44477000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:44476000-44477200	Enhancers	NH-A	brain
8	chr6:44476200-44476800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:44476200-44477000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:44476400-44477000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:44476400-44478600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr6:44476400-44481000	Weak transcription	HSMM	muscle
13	chr6:44476600-44477000	Enhancers	NHLF	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links