The 2.0 version of rSNPBase

Variant report

Variant rs16872079
Chromosome Location chr5:35130225-35130226
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:35127200-35132200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
2 chr5:35127600-35130600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
3 chr5:35128200-35136400 Weak transcription Primary monocytes fromperipheralblood blood
4 chr5:35128800-35130400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
5 chr5:35128800-35130600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
6 chr5:35128800-35130800 Enhancers HSMM muscle
7 chr5:35128800-35132600 Enhancers Osteobl bone
8 chr5:35129000-35130400 Enhancers HepG2 liver
9 chr5:35129000-35130400 Enhancers NH-A brain
10 chr5:35129000-35130600 Enhancers NHEK skin
11 chr5:35129000-35130800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
12 chr5:35129000-35131000 Enhancers Stomach Mucosa stomach
13 chr5:35129000-35131200 Enhancers Liver Liver
14 chr5:35129200-35132000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
15 chr5:35129400-35131200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr5:35129400-35131800 Enhancers NHLF lung
17 chr5:35129400-35132400 Enhancers Muscle Satellite Cultured Cells --
18 chr5:35129800-35130400 Flanking Active TSS Duodenum Mucosa Duodenum
19 chr5:35129800-35130600 Enhancers Primary T helper 17 cells PMA-I stimulated --
20 chr5:35129800-35130600 Enhancers Placenta Placenta
21 chr5:35129800-35130800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
22 chr5:35129800-35130800 Enhancers Rectal Mucosa Donor 31 rectum
23 chr5:35129800-35131000 Enhancers Primary T helper naive cells fromperipheralblood blood
24 chr5:35129800-35131000 Enhancers Primary T helper cells PMA-I stimulated --
25 chr5:35129800-35131000 Strong transcription Fetal Intestine Small intestine
26 chr5:35129800-35131200 Bivalent Enhancer Primary T cells fromperipheralblood blood
27 chr5:35129800-35131200 Enhancers Primary T killer naive cells fromperipheralblood blood
28 chr5:35129800-35131200 Enhancers Pancreas Pancrea
29 chr5:35129800-35131200 Bivalent Enhancer Dnd41 blood
30 chr5:35129800-35132200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr5:35130000-35130400 Enhancers Primary T helper naive cells from peripheral blood blood
32 chr5:35130000-35130400 Weak transcription Ovary ovary
33 chr5:35130000-35130800 Weak transcription Esophagus oesophagus
34 chr5:35130000-35131000 Enhancers Primary T helper memory cells from peripheral blood 2 blood
35 chr5:35130000-35131200 Bivalent Enhancer Fetal Thymus thymus
36 chr5:35130200-35130400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr5:35130200-35130600 Flanking Bivalent TSS/Enh Primary T cells from cord blood blood
38 chr5:35130200-35130600 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
39 chr5:35130200-35130600 Enhancers Sigmoid Colon Sigmoid Colon
40 chr5:35130200-35130800 Enhancers Rectal Mucosa Donor 29 rectum
41 chr5:35130200-35131000 Enhancers Primary T helper cells fromperipheralblood blood
42 chr5:35130200-35131200 Strong transcription Fetal Intestine Large intestine
43 chr5:35130200-35132600 Enhancers NHDF-Ad bronchial
44 chr5:35130200-35132800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr5:35130200-35133200 Weak transcription Placenta Amnion Placenta Amnion
46 chr5:35130200-35135400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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Last update: Aug 31, 2015