Variant report

Variant	rs344151
Chromosome Location	chr5:35040050-35040051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16871815	1.00[MEX][hapmap]
rs16872079	1.00[MEX][hapmap]
rs6881165	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028968	chr5:34945122-35060319	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv462120	chr5:34948532-35060319	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv597810	chr5:34948532-35060319	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv881528	chr5:35023034-35085180	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
5	nsv881411	chr5:35031338-35085180	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
6	nsv880606	chr5:35035579-35085180	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35033000-35044200	Weak transcription	Fetal Intestine Small	intestine
2	chr5:35033800-35045600	Weak transcription	Fetal Intestine Large	intestine
3	chr5:35036800-35043400	Weak transcription	Fetal Brain Female	brain
4	chr5:35038200-35040600	Enhancers	Fetal Brain Male	brain
5	chr5:35038800-35040800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:35039200-35042000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:35039400-35040800	Strong transcription	Liver	Liver
8	chr5:35039400-35041800	Enhancers	NH-A	brain
9	chr5:35039600-35042200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:35039600-35043000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr5:35039800-35041000	Weak transcription	NHDF-Ad	bronchial
12	chr5:35039800-35041400	Weak transcription	Osteobl	bone
13	chr5:35039800-35041600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr5:35039800-35043000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:35039800-35046200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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