Variant report

Variant	rs16872689
Chromosome Location	chr7:108760805-108760806
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17156489	1.00[AMR][1000 genomes]
rs55874438	1.00[AMR][1000 genomes]
rs55949635	1.00[AMR][1000 genomes]
rs56704317	1.00[AMR][1000 genomes]
rs58608203	1.00[AMR][1000 genomes]
rs59856728	1.00[AMR][1000 genomes]
rs73713336	1.00[AMR][1000 genomes]
rs73713343	1.00[AMR][1000 genomes]
rs73713375	1.00[AMR][1000 genomes]
rs73713377	1.00[AMR][1000 genomes]
rs73713381	1.00[AMR][1000 genomes]
rs73713401	1.00[AMR][1000 genomes]
rs73715813	1.00[AMR][1000 genomes]
rs73715815	1.00[AMR][1000 genomes]
rs73715821	1.00[AMR][1000 genomes]
rs73715867	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831091	chr7:108756218-108923644	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1018586	chr7:108759240-109034145	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108752600-108766800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:108760200-108764200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:108760800-108761000	Bivalent Enhancer	Fetal Lung	lung
4	chr7:108760800-108761400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr7:108760800-108763200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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