Variant report
| Variant | rs58608203 |
|---|---|
| Chromosome Location | chr7:108855470-108855471 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr15:85523640..85524561-chr7:108854830..108855472,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000073417 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs16872689 | 1.00[AMR][1000 genomes] |
| rs17156489 | 1.00[AMR][1000 genomes] |
| rs55949635 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56704317 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59856728 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73713343 | 1.00[AMR][1000 genomes] |
| rs73713375 | 1.00[AMR][1000 genomes] |
| rs73713377 | 1.00[AMR][1000 genomes] |
| rs73713381 | 1.00[AMR][1000 genomes] |
| rs73713401 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73715813 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73715815 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73715821 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73715867 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831091 | chr7:108756218-108923644 | Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1018586 | chr7:108759240-109034145 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv429794 | chr7:108763098-109003574 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1016803 | chr7:108786402-109013227 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv539054 | chr7:108786402-109013227 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv831094 | chr7:108806619-108981593 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:108855200-108855800 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
