Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1004201	0.84[ASN][1000 genomes]
rs10942740	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10942741	0.86[AFR][1000 genomes]
rs11952534	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11953883	1.00[ASN][1000 genomes]
rs1422441	1.00[ASN][1000 genomes]
rs1422442	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16872701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16872706	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16872710	1.00[CHB][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1991450	1.00[ASN][1000 genomes]
rs2112348	1.00[ASN][1000 genomes]
rs28376795	0.82[ASN][1000 genomes]
rs28562938	0.82[ASN][1000 genomes]
rs3822587	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs55817530	1.00[ASN][1000 genomes]
rs55831232	1.00[ASN][1000 genomes]
rs55849961	1.00[ASN][1000 genomes]
rs55885461	1.00[ASN][1000 genomes]
rs56348108	1.00[ASN][1000 genomes]
rs56813297	0.82[ASN][1000 genomes]
rs57670471	1.00[ASN][1000 genomes]
rs6873350	0.80[YRI][hapmap]
rs6895148	1.00[ASN][1000 genomes]
rs7715152	0.80[YRI][hapmap];0.84[AFR][1000 genomes]
rs888785	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74921800-74964400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:74944800-74947400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:74944800-74952200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:74945000-74947200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:74945000-74962800	Weak transcription	Fetal Intestine Large	intestine
6	chr5:74945800-74950800	Weak transcription	Right Atrium	heart
7	chr5:74946200-74947200	Weak transcription	Fetal Heart	heart
8	chr5:74946600-74952200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr5:74946600-74952400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr5:74946800-74947400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:74946800-74947400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr5:74947000-74947600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr5:74947000-74947600	Enhancers	Fetal Intestine Small	intestine

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