Variant report

Variant	rs888785
Chromosome Location	chr5:75025010-75025011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10942740	0.82[ASN][1000 genomes]
rs11952534	0.82[ASN][1000 genomes]
rs11953883	0.82[ASN][1000 genomes]
rs1422441	0.82[ASN][1000 genomes]
rs1422442	0.82[ASN][1000 genomes]
rs16872696	0.82[ASN][1000 genomes]
rs16872701	0.82[ASN][1000 genomes]
rs16872710	0.82[ASN][1000 genomes]
rs1991450	0.82[ASN][1000 genomes]
rs2112348	0.82[ASN][1000 genomes]
rs28376795	1.00[ASN][1000 genomes]
rs28562938	1.00[ASN][1000 genomes]
rs3822587	0.82[ASN][1000 genomes]
rs55817530	0.82[ASN][1000 genomes]
rs55831232	0.82[ASN][1000 genomes]
rs55849961	0.82[ASN][1000 genomes]
rs55885461	0.82[ASN][1000 genomes]
rs56348108	0.82[ASN][1000 genomes]
rs56813297	1.00[ASN][1000 genomes]
rs57670471	0.82[ASN][1000 genomes]
rs6895148	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv1850196	chr5:74890618-75138443	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv830353	chr5:74961520-75152609	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75024200-75025200	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr5:75024200-75026200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:75024400-75026200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:75024600-75025400	Enhancers	Brain Hippocampus Middle	brain
5	chr5:75024600-75025800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:75024800-75025200	Flanking Active TSS	Brain Substantia Nigra	brain
7	chr5:75024800-75025200	Enhancers	Gastric	stomach
8	chr5:75024800-75025600	Enhancers	Duodenum Mucosa	Duodenum
9	chr5:75024800-75025600	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr5:75024800-75026200	Enhancers	Pancreas	Pancrea
11	chr5:75025000-75025800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr5:75025000-75026000	Enhancers	Brain Angular Gyrus	brain
13	chr5:75025000-75026200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr5:75025000-75026200	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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