Variant report
| Variant | rs16872826 |
|---|---|
| Chromosome Location | chr7:21690670-21690671 |
| allele | A/C/G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10499533 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs10499536 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10499537 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12539119 | 1.00[CHB][hapmap] |
| rs1568777 | 0.82[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs16872823 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs17144776 | 1.00[MEX][hapmap] |
| rs17144811 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs17144816 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs17144822 | 0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17144825 | 0.81[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes] |
| rs17144830 | 0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17144847 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs17144850 | 0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17144853 | 0.82[CHB][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17144861 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17144863 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs55842322 | 0.84[AMR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6970367 | 0.82[CHB][hapmap];0.94[ASN][1000 genomes] |
| rs72657325 | 0.94[ASN][1000 genomes] |
| rs73072271 | 0.94[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1027302 | chr7:21391598-21727016 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 2 | nsv538800 | chr7:21391598-21727016 | Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 24 gene(s) | inside rSNPs | diseases |
| 3 | nsv1023655 | chr7:21486485-21727016 | Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv538801 | chr7:21486485-21727016 | ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionmiRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
