Variant report

Variant	rs17144853
Chromosome Location	chr7:21681178-21681179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10499533	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs10499536	0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10499537	0.82[CHB][hapmap]
rs1568777	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs16872823	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs16872826	0.82[CHB][hapmap]
rs17144811	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17144816	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17144822	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17144825	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs17144830	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17144847	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs17144850	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17144861	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17144863	0.82[CHB][hapmap];0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs55842322	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6970367	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs72657325	0.82[ASN][1000 genomes]
rs73072271	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027302	chr7:21391598-21727016	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv538800	chr7:21391598-21727016	Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1023655	chr7:21486485-21727016	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv538801	chr7:21486485-21727016	ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv830921	chr7:21489100-21688016	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1030577	chr7:21548909-21681379	Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1025634	chr7:21566727-21686272	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21672000-21683600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:21674200-21681400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:21679600-21682400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr7:21680000-21681800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:21680000-21681800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:21680200-21682000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr7:21681000-21681200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:21681000-21682400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links