Variant report

Variant	rs16872872
Chromosome Location	chr7:21765403-21765404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10230885	1.00[CEU][hapmap]
rs10230994	1.00[CEU][hapmap]
rs10235795	1.00[CEU][hapmap]
rs10260607	1.00[CEU][hapmap]
rs10260699	1.00[CEU][hapmap]
rs10261077	1.00[CEU][hapmap]
rs11971485	1.00[CEU][hapmap]
rs16872863	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17145111	0.83[JPT][hapmap];1.00[EUR][1000 genomes]
rs17145143	0.92[JPT][hapmap];1.00[EUR][1000 genomes]
rs17145460	1.00[CEU][hapmap]
rs2072218	1.00[EUR][1000 genomes]
rs2158870	0.85[CHB][hapmap]
rs2286269	1.00[CEU][hapmap]
rs4722050	1.00[CEU][hapmap]
rs61238310	1.00[EUR][1000 genomes]
rs73682683	1.00[EUR][1000 genomes]
rs7788469	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5655	chr7:21728469-21773203	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv14248	chr7:21763945-21769647	Inactive region	Chromatin interactive region	n/a	n/a	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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