Variant report

Variant	rs2286269
Chromosome Location	chr7:21805388-21805389
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21798369..21801038-chr7:21803838..21806561,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10230885	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs10230994	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs10235795	1.00[CEU][hapmap]
rs10248618	0.87[JPT][hapmap]
rs10260607	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs10260699	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs10261077	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs11971485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16872872	1.00[CEU][hapmap]
rs16872907	1.00[CHB][hapmap]
rs17145460	1.00[CEU][hapmap]
rs17277521	0.85[CHB][hapmap]
rs17354438	0.83[CHB][hapmap]
rs17356140	0.85[CHB][hapmap]
rs34915629	0.85[EUR][1000 genomes]
rs4722050	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs4722051	0.92[CHB][hapmap]
rs6461599	0.86[JPT][hapmap]
rs6942457	0.83[CHB][hapmap]
rs7788469	1.00[CEU][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21796600-21810000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr7:21803400-21808000	Enhancers	Fetal Heart	heart
3	chr7:21804000-21805800	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr7:21804000-21808000	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:21804200-21805600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:21804200-21805600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:21804400-21805400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:21804600-21805600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr7:21804800-21805600	Enhancers	H9 Cell Line	embryonic stem cell
10	chr7:21804800-21805800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:21804800-21806600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:21805000-21805400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:21805000-21805600	Bivalent Enhancer	Fetal Brain Male	brain
14	chr7:21805000-21805600	Bivalent Enhancer	Left Ventricle	heart
15	chr7:21805000-21806200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:21805000-21806200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr7:21805200-21805400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr7:21805200-21805600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:21805200-21805600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
20	chr7:21805200-21805600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr7:21805200-21806000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr7:21805200-21810000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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