Variant report

Variant	rs34915629
Chromosome Location	chr7:21811677-21811678
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2286269	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv470177	chr7:21801125-21817048	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv5656	chr7:21810397-21816672	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21805600-21813800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:21805600-21813800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:21806200-21812400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:21810000-21812800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:21810000-21814000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:21810000-21814600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:21810200-21813200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:21810400-21812400	Bivalent Enhancer	Fetal Brain Male	brain
9	chr7:21810400-21813000	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr7:21810400-21813600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr7:21810600-21813200	Enhancers	Colon Smooth Muscle	Colon
12	chr7:21810600-21813600	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:21810800-21812000	Active TSS	Stomach Smooth Muscle	stomach
14	chr7:21810800-21812200	Enhancers	Fetal Brain Female	brain
15	chr7:21810800-21812200	Enhancers	Fetal Heart	heart
16	chr7:21810800-21812800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr7:21810800-21814000	Enhancers	Brain Angular Gyrus	brain
18	chr7:21811000-21811800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:21811000-21811800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr7:21811000-21813400	Enhancers	Brain Cingulate Gyrus	brain
21	chr7:21811200-21812400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:21811200-21812600	Enhancers	Fetal Stomach	stomach
23	chr7:21811200-21812800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:21811200-21813600	Enhancers	Rectal Smooth Muscle	rectum
25	chr7:21811200-21813800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:21811400-21812000	Active TSS	Brain Anterior Caudate	brain
27	chr7:21811400-21813000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:21811400-21813800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr7:21811600-21811800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
30	chr7:21811600-21812000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr7:21811600-21812000	Flanking Active TSS	Brain Hippocampus Middle	brain
32	chr7:21811600-21812000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr7:21811600-21812000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:21811600-21812000	Flanking Active TSS	Brain Substantia Nigra	brain
35	chr7:21811600-21812000	Enhancers	Fetal Muscle Leg	muscle
36	chr7:21811600-21812000	Enhancers	HMEC	breast
37	chr7:21811600-21812000	Enhancers	K562	blood
38	chr7:21811600-21812200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr7:21811600-21812400	Weak transcription	Brain Germinal Matrix	brain
40	chr7:21811600-21812600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:21811600-21812600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:21811600-21813200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr7:21811600-21813200	Enhancers	NHEK	skin
44	chr7:21811600-21814200	Enhancers	Cortex derived primary cultured neurospheres	brain

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