Variant report

Variant	rs16872892
Chromosome Location	chr5:42899751-42899752
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10063717	0.96[EUR][1000 genomes]
rs10071470	1.00[EUR][1000 genomes]
rs10071534	1.00[EUR][1000 genomes]
rs12110284	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16872880	1.00[EUR][1000 genomes]
rs16872890	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872900	0.96[EUR][1000 genomes]
rs16872913	1.00[EUR][1000 genomes]
rs16872933	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2001839	0.92[AFR][1000 genomes]
rs2085140	0.83[EUR][1000 genomes]
rs28520523	0.83[EUR][1000 genomes]
rs41428644	1.00[EUR][1000 genomes]
rs55881014	1.00[EUR][1000 genomes]
rs56962140	0.92[EUR][1000 genomes]
rs57694037	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58193290	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59119749	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60196651	1.00[EUR][1000 genomes]
rs60859843	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6859319	0.92[EUR][1000 genomes]
rs6867941	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6869034	1.00[EUR][1000 genomes]
rs6875668	0.89[AFR][1000 genomes]
rs6882380	1.00[EUR][1000 genomes]
rs6890021	0.82[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs6895961	0.92[EUR][1000 genomes]
rs6898323	0.92[EUR][1000 genomes]
rs73090747	0.92[EUR][1000 genomes]
rs73751285	1.00[EUR][1000 genomes]
rs7709338	0.96[EUR][1000 genomes]
rs7721545	0.96[EUR][1000 genomes]
rs7725727	0.92[EUR][1000 genomes]
rs7730865	0.92[EUR][1000 genomes]
rs936071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
2	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
3	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
4	nsv523033	chr5:42752037-42919685	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
6	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
7	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
8	nsv1018276	chr5:42809131-42975245	Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv980936	chr5:42894375-42930741	Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42894400-42902000	Weak transcription	Right Atrium	heart
2	chr5:42894600-42908600	Weak transcription	Pancreas	Pancrea

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