Variant report

Variant	rs55881014
Chromosome Location	chr5:42859919-42859920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10063717	0.96[EUR][1000 genomes]
rs10071470	1.00[EUR][1000 genomes]
rs10071534	1.00[EUR][1000 genomes]
rs12110284	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872880	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16872890	1.00[EUR][1000 genomes]
rs16872892	1.00[EUR][1000 genomes]
rs16872900	0.96[EUR][1000 genomes]
rs16872913	1.00[EUR][1000 genomes]
rs16872933	1.00[EUR][1000 genomes]
rs2001839	0.84[AMR][1000 genomes]
rs2085140	0.83[EUR][1000 genomes]
rs28520523	0.83[EUR][1000 genomes]
rs41428644	1.00[EUR][1000 genomes]
rs56962140	0.92[EUR][1000 genomes]
rs57694037	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58193290	1.00[EUR][1000 genomes]
rs59119749	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60196651	1.00[EUR][1000 genomes]
rs60859843	0.92[EUR][1000 genomes]
rs6859319	0.92[EUR][1000 genomes]
rs6867941	0.92[EUR][1000 genomes]
rs6869034	1.00[EUR][1000 genomes]
rs6882380	1.00[EUR][1000 genomes]
rs6890021	0.92[EUR][1000 genomes]
rs6895961	0.92[EUR][1000 genomes]
rs6898323	0.92[EUR][1000 genomes]
rs73090747	0.92[EUR][1000 genomes]
rs73751285	1.00[EUR][1000 genomes]
rs7709338	0.96[EUR][1000 genomes]
rs7721545	0.96[EUR][1000 genomes]
rs7725727	0.92[EUR][1000 genomes]
rs7730865	0.92[EUR][1000 genomes]
rs936071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933208	chr5:41879946-42876624	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	112 gene(s)	inside rSNPs	diseases
2	nsv492147	chr5:41902086-42896162	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	113 gene(s)	inside rSNPs	diseases
3	nsv993554	chr5:42720939-43251863	Bivalent/Poised TSS Strong transcription Active TSS Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	298 gene(s)	inside rSNPs	diseases
4	nsv462126	chr5:42728831-43237188	Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
5	nsv597925	chr5:42728831-43237188	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	297 gene(s)	inside rSNPs	diseases
6	nsv523033	chr5:42752037-42919685	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv965602	chr5:42767568-42889585	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
9	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
10	nsv534185	chr5:42804840-43067088	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	165 gene(s)	inside rSNPs	diseases
11	nsv1018276	chr5:42809131-42975245	Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:42859200-42860000	Enhancers	HepG2	liver
2	chr5:42859400-42860000	Enhancers	Brain Anterior Caudate	brain
3	chr5:42859400-42860200	Enhancers	Brain Hippocampus Middle	brain
4	chr5:42859600-42860000	Enhancers	Brain Angular Gyrus	brain
5	chr5:42859600-42860400	Enhancers	Brain Cingulate Gyrus	brain
6	chr5:42859600-42860600	Enhancers	Brain Substantia Nigra	brain

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