Variant report

Variant	rs16872986
Chromosome Location	chr4:22698663-22698664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs16872976	0.94[AFR][1000 genomes]
rs16872984	0.90[AFR][1000 genomes]
rs16872988	0.94[AFR][1000 genomes]
rs16872994	0.94[AFR][1000 genomes]
rs16872995	0.94[AFR][1000 genomes]
rs16872998	0.94[AFR][1000 genomes]
rs16873004	0.94[AFR][1000 genomes]
rs16873006	0.94[AFR][1000 genomes]
rs16873007	0.90[AFR][1000 genomes]
rs16873009	0.90[AFR][1000 genomes]
rs16873011	0.90[AFR][1000 genomes]
rs16873013	0.90[AFR][1000 genomes]
rs16873014	0.90[AFR][1000 genomes]
rs16873016	0.90[AFR][1000 genomes]
rs16873028	0.81[AFR][1000 genomes]
rs16873032	0.94[AFR][1000 genomes]
rs16873034	0.94[AFR][1000 genomes]
rs16873038	0.94[AFR][1000 genomes]
rs57365099	0.94[AFR][1000 genomes]
rs60067648	0.94[AFR][1000 genomes]
rs60115770	0.94[AFR][1000 genomes]
rs60492133	0.94[AFR][1000 genomes]
rs61480884	0.94[AFR][1000 genomes]
rs61674690	0.90[AFR][1000 genomes]
rs73108273	0.94[AFR][1000 genomes]
rs73108274	0.94[AFR][1000 genomes]
rs73108277	0.94[AFR][1000 genomes]
rs73108278	0.94[AFR][1000 genomes]
rs73108279	0.94[AFR][1000 genomes]
rs73108280	0.94[AFR][1000 genomes]
rs73108282	0.94[AFR][1000 genomes]
rs73108288	0.94[AFR][1000 genomes]
rs73108291	0.94[AFR][1000 genomes]
rs73108296	0.94[AFR][1000 genomes]
rs73108299	0.94[AFR][1000 genomes]
rs73109703	0.94[AFR][1000 genomes]
rs73109705	0.94[AFR][1000 genomes]
rs73109706	0.94[AFR][1000 genomes]
rs73109710	0.94[AFR][1000 genomes]
rs73109713	0.94[AFR][1000 genomes]
rs73109777	0.94[AFR][1000 genomes]
rs73109779	0.94[AFR][1000 genomes]
rs73109781	0.94[AFR][1000 genomes]
rs73109782	0.94[AFR][1000 genomes]
rs73109783	0.94[AFR][1000 genomes]
rs73109785	0.94[AFR][1000 genomes]
rs73109790	0.94[AFR][1000 genomes]
rs73109792	0.94[AFR][1000 genomes]
rs73109793	0.90[AFR][1000 genomes]
rs73109794	0.94[AFR][1000 genomes]
rs73109795	0.94[AFR][1000 genomes]
rs73109800	0.94[AFR][1000 genomes]
rs73111604	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22694400-22699200	Active TSS	Duodenum Mucosa	Duodenum
2	chr4:22697000-22698800	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr4:22697200-22698800	Active TSS	Fetal Intestine Small	intestine
4	chr4:22698200-22699800	Enhancers	Liver	Liver
5	chr4:22698600-22699000	Flanking Active TSS	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links