Variant report

Variant	rs73108277
Chromosome Location	chr4:22694421-22694422
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr4:22694349-22694616	HepG2	liver:	n/a	n/a
2	FOXA1	chr4:22694349-22694628	HepG2	liver:	n/a	n/a
3	FOXA1	chr4:22694265-22694714	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PACRGL-12	chr4:22694418-22694509	l_2614_chr4:22608314-22651921_testes

Variant related genes	Relation type
GBA3	TF binding region

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs16872976	1.00[AFR][1000 genomes]
rs16872984	0.97[AFR][1000 genomes]
rs16872986	0.94[AFR][1000 genomes]
rs16872988	1.00[AFR][1000 genomes]
rs16872994	1.00[AFR][1000 genomes]
rs16872995	1.00[AFR][1000 genomes]
rs16872998	1.00[AFR][1000 genomes]
rs16873004	1.00[AFR][1000 genomes]
rs16873006	1.00[AFR][1000 genomes]
rs16873007	0.97[AFR][1000 genomes]
rs16873009	0.97[AFR][1000 genomes]
rs16873011	0.97[AFR][1000 genomes]
rs16873013	0.97[AFR][1000 genomes]
rs16873014	0.97[AFR][1000 genomes]
rs16873016	0.97[AFR][1000 genomes]
rs16873028	0.87[AFR][1000 genomes]
rs16873032	1.00[AFR][1000 genomes]
rs16873034	1.00[AFR][1000 genomes]
rs16873038	1.00[AFR][1000 genomes]
rs57365099	1.00[AFR][1000 genomes]
rs60067648	1.00[AFR][1000 genomes]
rs60115770	1.00[AFR][1000 genomes]
rs60142187	0.83[AFR][1000 genomes]
rs60492133	1.00[AFR][1000 genomes]
rs61480884	1.00[AFR][1000 genomes]
rs61674690	0.97[AFR][1000 genomes]
rs73108270	0.85[AFR][1000 genomes]
rs73108273	1.00[AFR][1000 genomes]
rs73108274	1.00[AFR][1000 genomes]
rs73108278	1.00[AFR][1000 genomes]
rs73108279	1.00[AFR][1000 genomes]
rs73108280	1.00[AFR][1000 genomes]
rs73108282	1.00[AFR][1000 genomes]
rs73108288	1.00[AFR][1000 genomes]
rs73108291	1.00[AFR][1000 genomes]
rs73108296	1.00[AFR][1000 genomes]
rs73108299	1.00[AFR][1000 genomes]
rs73109703	1.00[AFR][1000 genomes]
rs73109705	1.00[AFR][1000 genomes]
rs73109706	1.00[AFR][1000 genomes]
rs73109710	1.00[AFR][1000 genomes]
rs73109713	1.00[AFR][1000 genomes]
rs73109777	1.00[AFR][1000 genomes]
rs73109779	1.00[AFR][1000 genomes]
rs73109781	1.00[AFR][1000 genomes]
rs73109782	1.00[AFR][1000 genomes]
rs73109783	1.00[AFR][1000 genomes]
rs73109785	1.00[AFR][1000 genomes]
rs73109790	1.00[AFR][1000 genomes]
rs73109792	1.00[AFR][1000 genomes]
rs73109793	0.97[AFR][1000 genomes]
rs73109794	1.00[AFR][1000 genomes]
rs73109795	1.00[AFR][1000 genomes]
rs73109800	1.00[AFR][1000 genomes]
rs73111604	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349061	chr4:22379581-22887563	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv821634	chr4:22427074-22865948	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv829883	chr4:22666326-22842517	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:22682200-22694600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:22693400-22695000	Enhancers	HepG2	liver
3	chr4:22693600-22694800	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr4:22694000-22696600	Flanking Active TSS	Liver	Liver
5	chr4:22694200-22696400	Active TSS	Fetal Intestine Small	intestine
6	chr4:22694400-22695400	Active TSS	Fetal Intestine Large	intestine
7	chr4:22694400-22697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:22694400-22699200	Active TSS	Duodenum Mucosa	Duodenum

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