Variant report

Variant	rs16873072
Chromosome Location	chr7:22007180-22007181
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10223966	0.90[ASN][1000 genomes]
rs17145948	0.90[ASN][1000 genomes]
rs6950173	1.00[JPT][hapmap]
rs6959372	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv870325	chr7:21979039-22120493	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
3	nsv1029966	chr7:21999316-22028266	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22003200-22008600	Enhancers	Primary B cells from cord blood	blood
2	chr7:22004000-22009200	Enhancers	Primary B cells from peripheral blood	blood
3	chr7:22004400-22008000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:22004600-22007800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:22004800-22008600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:22005000-22007200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr7:22005000-22008400	Enhancers	Primary hematopoietic stem cells	blood
8	chr7:22005800-22010000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:22005800-22011600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr7:22006000-22011200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr7:22006200-22010800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:22006600-22008200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr7:22006800-22008000	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr7:22007000-22007200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:22007000-22007600	Flanking Active TSS	GM12878-XiMat	blood
16	chr7:22007000-22008000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr7:22007000-22008000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr7:22007000-22008200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr7:22007000-22008400	Enhancers	Primary T cells fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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