Variant report

Variant	rs16873388
Chromosome Location	chr7:112071859-112071860
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:112071773-112071968	SH-SY5Y	brain:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112071817..112074213-chr7:112075393..112077326,2	K562	blood:
2	chr7:112063067..112065843-chr7:112069945..112073273,3	MCF-7	breast:
3	chr7:112058803..112077296-chr7:112087519..112096464,50	MCF-7	breast:
4	chr7:112070004..112076448-chr7:112089182..112092278,11	K562	blood:
5	chr7:112061765..112065732-chr7:112068106..112072509,5	K562	blood:
6	chr7:112068681..112072982-chr7:112088241..112094546,7	MCF-7	breast:
7	chr7:112062823..112064395-chr7:112070035..112072509,2	K562	blood:
8	chr7:112069794..112072513-chr7:112074999..112076971,2	MCF-7	breast:
9	chr7:112066485..112069249-chr7:112070711..112073624,2	MCF-7	breast:
10	chr7:112071300..112074069-chr7:112086981..112088572,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs57397677	1.00[AMR][1000 genomes]
rs58870749	1.00[AMR][1000 genomes]
rs60669231	1.00[AMR][1000 genomes]
rs73422544	1.00[AMR][1000 genomes]
rs73424403	1.00[AMR][1000 genomes]
rs73424419	1.00[AMR][1000 genomes]
rs73424431	1.00[AMR][1000 genomes]
rs73424457	1.00[AMR][1000 genomes]
rs73424472	1.00[AMR][1000 genomes]
rs73424486	1.00[AMR][1000 genomes]
rs73424489	1.00[AMR][1000 genomes]
rs73424499	1.00[AMR][1000 genomes]
rs73426433	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426464	1.00[AMR][1000 genomes]
rs73426494	1.00[AMR][1000 genomes]
rs73428448	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73440668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
2	nsv831097	chr7:112000837-112113173	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	esv1801262	chr7:112071795-112104179	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112061000-112089800	Weak transcription	Aorta	Aorta
2	chr7:112064200-112088400	Weak transcription	Psoas Muscle	Psoas
3	chr7:112064400-112074800	Weak transcription	A549	lung
4	chr7:112065800-112079800	Weak transcription	Pancreas	Pancrea
5	chr7:112068600-112077200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:112070800-112073400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr7:112071000-112072400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr7:112071000-112077000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:112071800-112072600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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