Variant report

Variant	rs73424499
Chromosome Location	chr7:111968280-111968281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:111960085..111962357-chr7:111965697..111968570,2	K562	blood:
2	chr7:111966020..111968583-chr7:111970529..111973341,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DOCK4-1	chr7:111968244-111968453	ENSG00000226851.1

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16873388	1.00[AMR][1000 genomes]
rs57397677	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58870749	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60669231	1.00[AMR][1000 genomes]
rs73422544	1.00[AMR][1000 genomes]
rs73424403	1.00[AMR][1000 genomes]
rs73424419	1.00[AMR][1000 genomes]
rs73424431	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73424489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73426433	1.00[AMR][1000 genomes]
rs73426464	1.00[AMR][1000 genomes]
rs73426494	1.00[AMR][1000 genomes]
rs73428448	1.00[AMR][1000 genomes]
rs73440668	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491934	chr7:111333900-111975504	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv532335	chr7:111411990-112054905	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases
4	nsv1020212	chr7:111944370-112032596	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv5902	chr7:111952128-111997265	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:111926200-111979600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr7:111926600-111982200	Weak transcription	Right Ventricle	heart
3	chr7:111928600-111978000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:111931000-111981000	Weak transcription	HSMMtube	muscle
5	chr7:111943000-111978600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr7:111943000-111985200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:111945200-111986800	Weak transcription	Hela-S3	cervix
8	chr7:111947400-111981000	Weak transcription	Brain Angular Gyrus	brain
9	chr7:111956200-111977200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:111956200-111982400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr7:111956200-111983200	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:111957400-111980200	Weak transcription	NHDF-Ad	bronchial
13	chr7:111957800-111980200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr7:111958600-111968600	Strong transcription	Dnd41	blood
15	chr7:111958800-111987400	Weak transcription	Colon Smooth Muscle	Colon
16	chr7:111959000-111972400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:111959000-111982400	Weak transcription	HUVEC	blood vessel
18	chr7:111959200-111969400	Weak transcription	Stomach Mucosa	stomach
19	chr7:111960800-111990000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr7:111961000-111987000	Weak transcription	Small Intestine	intestine
21	chr7:111961800-111986000	Weak transcription	K562	blood
22	chr7:111962000-111978800	Weak transcription	HSMM	muscle
23	chr7:111962200-111970400	Strong transcription	Liver	Liver
24	chr7:111962200-111971000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:111962200-111971000	Weak transcription	Fetal Brain Female	brain
26	chr7:111962200-111978600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr7:111962200-111982200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr7:111962400-111969800	Weak transcription	HepG2	liver
29	chr7:111962400-111971000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:111962400-111977800	Weak transcription	Psoas Muscle	Psoas
31	chr7:111962600-111972800	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr7:111962800-111968600	Strong transcription	Primary T cells from cord blood	blood
33	chr7:111963200-111971000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr7:111963200-111976400	Weak transcription	Fetal Heart	heart
35	chr7:111963400-111968400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr7:111963400-111968600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr7:111963400-111971000	Weak transcription	Cortex derived primary cultured neurospheres	brain
38	chr7:111963600-111971000	Weak transcription	Fetal Brain Male	brain
39	chr7:111963600-111976000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:111963600-111980200	Weak transcription	A549	lung
41	chr7:111963600-111980800	Weak transcription	NHEK	skin
42	chr7:111963800-111977400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr7:111963800-111984400	Weak transcription	HMEC	breast
44	chr7:111963800-111987200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr7:111964600-111968400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr7:111964800-111968400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:111965400-111973800	Weak transcription	Fetal Kidney	kidney
48	chr7:111965400-111980000	Weak transcription	Brain Substantia Nigra	brain
49	chr7:111965600-111971000	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr7:111965600-111971000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links