Variant report

Variant	rs16873636
Chromosome Location	chr6:13153763-13153764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10948508	1.00[CHB][hapmap];0.83[JPT][hapmap]
rs11963505	1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs11964894	0.88[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs11968523	0.82[CHB][hapmap];0.81[JPT][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12192359	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs58229352	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58465520	0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59859761	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73723394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771293	1.00[CHB][hapmap];0.89[CHD][hapmap];0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600992	chr6:12961922-13218549	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13142400-13159400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:13146000-13158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:13146000-13159200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:13150000-13175600	Weak transcription	Lung	lung
5	chr6:13152600-13154000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr6:13152600-13154000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:13152600-13154000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr6:13152600-13154000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:13152600-13154000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:13152600-13154000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr6:13152600-13154000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:13152600-13154000	Enhancers	Fetal Heart	heart
13	chr6:13152800-13153800	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:13152800-13153800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:13152800-13153800	Enhancers	Brain Anterior Caudate	brain
16	chr6:13152800-13154000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:13153000-13153800	Enhancers	Aorta	Aorta
18	chr6:13153000-13153800	Enhancers	Stomach Smooth Muscle	stomach
19	chr6:13153000-13154000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:13153000-13154000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr6:13153000-13154000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:13153000-13154000	Enhancers	Brain Substantia Nigra	brain
23	chr6:13153200-13153800	Enhancers	Colon Smooth Muscle	Colon
24	chr6:13153200-13153800	Enhancers	Fetal Brain Male	brain
25	chr6:13153400-13156800	Weak transcription	Left Ventricle	heart
26	chr6:13153400-13178000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:13153600-13154000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:13153600-13154000	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr6:13153600-13154000	Enhancers	Rectal Smooth Muscle	rectum
30	chr6:13153600-13159200	Weak transcription	Right Ventricle	heart
31	chr6:13153600-13164400	Weak transcription	Brain Germinal Matrix	brain
32	chr6:13153600-13167200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:13153600-13178200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:13153600-13178200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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